Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LUAD | rs11653762 | chr17:47410889 | G/A | 5.23E-11 | 503 | 21.93 | 19.15 | 4.55 | KM Plot |
| LUAD | rs11654557 | chr17:47390136 | A/G | 5.65E-11 | 502 | 21.93 | 20.3 | 4.55 | KM Plot |
| LUAD | rs11655191 | chr17:47452263 | C/T | 6.05E-11 | 501 | 21.92 | 18 | 4.55 | KM Plot |
| LUAD | rs11656535 | chr17:47425588 | C/T | 3.01E-11 | 502 | 21.77 | 21.7 | 4.55 | KM Plot |
| LUAD | rs11658111 | chr17:47383994 | C/T | 3.51E-11 | 500 | 21.87 | 21.93 | 4.55 | KM Plot |
| LUAD | rs117087923 | chr17:47364913 | G/A | 6.31E-11 | 500 | 21.93 | 20.3 | 4.55 | KM Plot |
| LUAD | rs117278933 | chr17:45831744 | T/A | 1.02E-6 | 504 | 21.87 | 21.4 | 3.97 | KM Plot |
| LUAD | rs117549066 | chr17:45825384 | A/G | 1.02E-6 | 504 | 21.87 | 21.4 | 3.97 | KM Plot |
| LUAD | rs117801358 | chr17:47447950 | C/A | 5.48E-11 | 503 | 21.93 | 19.15 | 4.55 | KM Plot |
| LUAD | rs117853079 | chr17:47421593 | G/C | 5.17E-11 | 503 | 21.92 | 18 | 4.55 | KM Plot |
| LUAD | rs117993299 | chr17:45806297 | T/A | 1.34E-6 | 503 | 21.77 | 21.93 | 3.97 | KM Plot |
| LUAD | rs118099826 | chr17:47447836 | G/T | 5.48E-11 | 503 | 21.93 | 19.15 | 4.55 | KM Plot |
| LUAD | rs11978345 | chr7:98930036 | G/T | 2.22E-6 | 503 | 21.07 | 26.13 | 9.7 | KM Plot |
| LUAD | rs11978582 | chr7:98915958 | C/T | 3.49E-6 | 505 | 9.32 | 25.23 | 21.7 | KM Plot |
| LUAD | rs12036666 | chr1:205618659 | G/A | 6.22E-7 | 501 | 21.93 | 21.8 | 1.93 | KM Plot |